SNP Report
Basic Infomation
| Name | rs961700 dbSNP |
|---|---|
| Location | chr:14,68331437 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 107)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130919 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10131048 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10132022 | 0.89[GIH][hapmap] |
| rs10132318 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10133239 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10133262 | 0.88[GIH][hapmap] |
| rs10137614 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10137930 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10143455 | 0.89[GIH][hapmap] |
| rs10146380 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10148527 | 0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1015023 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10873208 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11158693 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11158695 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11158697 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11158700 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11158701 | 0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11620947 | 0.84[AMR][1000 genomes] |
| rs11622521 | 0.88[ASN][1000 genomes] |
| rs11622535 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11623355 | 0.89[GIH][hapmap] |
| rs11623756 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11624166 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11626332 | 0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11626594 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11626778 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11627100 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11627417 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11844492 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11846344 | 0.89[GIH][hapmap] |
| rs11847628 | 0.86[GIH][hapmap] |
| rs11850191 | 0.89[GIH][hapmap] |
| rs12431490 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12431697 | 0.89[GIH][hapmap] |
| rs12432558 | 0.89[CEU][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs12434751 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12437178 | 0.89[GIH][hapmap] |
| rs12586329 | 0.83[ASN][1000 genomes] |
| rs12588401 | 0.83[ASN][1000 genomes] |
| rs12886915 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12891047 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12892221 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12896666 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs17104681 | 0.88[CHD][hapmap] |
| rs17104700 | 0.88[CHD][hapmap] |
| rs17783124 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17783160 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs181563 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs181566 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs181572 | 0.82[AMR][1000 genomes] |
| rs181575 | 0.86[GIH][hapmap] |
| rs1950767 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1950769 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1955470 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1956345 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1956346 | 0.84[AMR][1000 genomes] |
| rs1956347 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1956348 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1980654 | 0.86[GIH][hapmap] |
| rs2235962 | 0.81[GIH][hapmap] |
| rs2235963 | 0.83[GIH][hapmap] |
| rs28373844 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28604984 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28623567 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28713367 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2874131 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs28855496 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3742884 | 0.88[CHD][hapmap] |
| rs4402486 | 0.82[AMR][1000 genomes] |
| rs4569184 | 0.83[GIH][hapmap] |
| rs4902517 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4902518 | 0.83[ASN][1000 genomes] |
| rs4902519 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4902533 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4902536 | 0.89[GIH][hapmap] |
| rs4902538 | 0.89[GIH][hapmap] |
| rs55999745 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7143521 | 0.88[CHD][hapmap] |
| rs7146354 | 0.81[YRI][hapmap] |
| rs7150705 | 0.89[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs7150860 | 0.88[CHD][hapmap] |
| rs7150903 | 0.89[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs7151091 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7151495 | 0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7154635 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7154646 | 0.89[GIH][hapmap] |
| rs7157288 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7159109 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7160196 | 0.82[AMR][1000 genomes] |
| rs72725127 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs764088 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs767972 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs8003431 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8006089 | 0.86[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs8009358 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8009455 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8011393 | 1.00[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs8011690 | 0.84[AMR][1000 genomes] |
| rs8013677 | 0.83[YRI][hapmap] |
| rs8017007 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8017013 | 0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8018709 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8020795 | 0.89[GIH][hapmap] |
| rs932554 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs932555 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs986382 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Proximal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014