SNP Report
Basic Infomation
| Name | rs932554 dbSNP |
|---|---|
| Location | chr:14,68293923 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 69)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130919 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10131048 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10132318 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10133239 | 1.00[ASN][1000 genomes] |
| rs10137614 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10137930 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10146380 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1015023 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10873208 | 1.00[ASN][1000 genomes] |
| rs11158693 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11158695 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11158697 | 1.00[ASN][1000 genomes] |
| rs11622521 | 1.00[ASN][1000 genomes] |
| rs11622535 | 1.00[ASN][1000 genomes] |
| rs11623756 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11624166 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11626594 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11626778 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11627100 | 1.00[ASN][1000 genomes] |
| rs11627417 | 1.00[ASN][1000 genomes] |
| rs11844492 | 1.00[ASN][1000 genomes] |
| rs12586329 | 0.95[ASN][1000 genomes] |
| rs12588401 | 0.95[ASN][1000 genomes] |
| rs12886915 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12891047 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12892221 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12896666 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs17104681 | 0.88[CHD][hapmap] |
| rs17104700 | 0.88[CHD][hapmap] |
| rs17783124 | 0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17783160 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs181563 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs181566 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1950769 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs1955470 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1956345 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1956347 | 1.00[ASN][1000 genomes] |
| rs1956348 | 1.00[ASN][1000 genomes] |
| rs28373844 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28604984 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28623567 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2874131 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs3742884 | 0.88[CHD][hapmap] |
| rs4902517 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4902518 | 0.95[ASN][1000 genomes] |
| rs4902519 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs55854324 | 0.88[EUR][1000 genomes] |
| rs55867043 | 0.88[EUR][1000 genomes] |
| rs55999745 | 1.00[ASN][1000 genomes] |
| rs7143196 | 0.85[MEX][hapmap] |
| rs7143521 | 0.88[CHD][hapmap] |
| rs7150860 | 0.88[CHD][hapmap] |
| rs7151091 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7154635 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7157288 | 0.88[ASN][1000 genomes] |
| rs7159109 | 0.92[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7159489 | 0.85[AFR][1000 genomes] |
| rs72723202 | 0.88[EUR][1000 genomes] |
| rs767972 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs8003431 | 0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8009358 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs8009455 | 0.85[ASN][1000 genomes] |
| rs8011393 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs8017007 | 0.85[ASN][1000 genomes] |
| rs8017013 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs8018709 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs932555 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs961700 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs986382 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014