SNP Report
Basic Infomation
| Name | rs7159489 dbSNP |
|---|---|
| Location | chr:14,68284401 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130919 | 0.86[AMR][1000 genomes] |
| rs10133239 | 0.86[AMR][1000 genomes] |
| rs10135927 | 0.81[AMR][1000 genomes] |
| rs10137614 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs10137930 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs10141638 | 0.81[AMR][1000 genomes] |
| rs10146380 | 0.84[AMR][1000 genomes] |
| rs10873208 | 0.86[AMR][1000 genomes] |
| rs11158697 | 0.86[AMR][1000 genomes] |
| rs11620947 | 0.81[AMR][1000 genomes] |
| rs11622521 | 0.90[AMR][1000 genomes] |
| rs11622535 | 0.84[AMR][1000 genomes] |
| rs11623756 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11626769 | 0.82[AMR][1000 genomes] |
| rs11626778 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11627100 | 0.86[AMR][1000 genomes] |
| rs11627417 | 0.86[AMR][1000 genomes] |
| rs11844492 | 0.86[AMR][1000 genomes] |
| rs17783094 | 0.82[AMR][1000 genomes] |
| rs17783124 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs17783160 | 0.86[AMR][1000 genomes] |
| rs181563 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1956345 | 0.86[AMR][1000 genomes] |
| rs1956346 | 0.81[AMR][1000 genomes] |
| rs1956347 | 0.86[AMR][1000 genomes] |
| rs1956348 | 0.86[AMR][1000 genomes] |
| rs28373844 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs28604984 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs28623567 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs35272075 | 0.81[AMR][1000 genomes] |
| rs4284565 | 0.84[AMR][1000 genomes] |
| rs4402486 | 0.81[AMR][1000 genomes] |
| rs55999745 | 0.86[AMR][1000 genomes] |
| rs7149482 | 0.82[AMR][1000 genomes] |
| rs7154635 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs7159109 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs72723196 | 0.82[AMR][1000 genomes] |
| rs72725103 | 0.82[AMR][1000 genomes] |
| rs72725114 | 0.81[AMR][1000 genomes] |
| rs8003431 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs8004611 | 0.83[AMR][1000 genomes] |
| rs8006089 | 0.82[AMR][1000 genomes] |
| rs8011393 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs8012974 | 0.82[AMR][1000 genomes] |
| rs8017013 | 0.86[AMR][1000 genomes] |
| rs8018709 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs932554 | 0.85[AFR][1000 genomes] |
| rs932555 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFYVE26 | Proximal transcriptional regulation |
| RAD51B | Proximal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| RDH12 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014