SNP Report

Basic Infomation

Name	rs55939271 dbSNP
Location	chr:5,130856743
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 98)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1044402	1.00[EUR][1000 genomes]
rs11242071	0.83[AMR][1000 genomes]
rs11242072	0.83[AMR][1000 genomes]
rs11953301	1.00[EUR][1000 genomes]
rs12108740	1.00[AMR][1000 genomes]
rs12108819	1.00[AMR][1000 genomes]
rs12108829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12108954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12110164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12110184	0.83[AMR][1000 genomes]
rs17167499	1.00[EUR][1000 genomes]
rs17167682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17167683	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4526097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55642088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55734376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55750965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55773458	1.00[EUR][1000 genomes]
rs55894225	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55923765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56100851	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56121529	1.00[EUR][1000 genomes]
rs56163891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187427	1.00[EUR][1000 genomes]
rs56225468	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56235343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56262921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56693198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56796052	1.00[EUR][1000 genomes]
rs57157881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57505395	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57623245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57700693	1.00[EUR][1000 genomes]
rs57727293	1.00[EUR][1000 genomes]
rs57925080	0.84[AFR][1000 genomes]
rs58583866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58816971	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58993531	0.90[AFR][1000 genomes]
rs60418447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60527956	1.00[EUR][1000 genomes]
rs60844708	1.00[EUR][1000 genomes]
rs61122547	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61216813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61483560	1.00[EUR][1000 genomes]
rs6859517	1.00[AMR][1000 genomes]
rs6869375	1.00[AMR][1000 genomes]
rs6878276	1.00[AMR][1000 genomes]
rs6897210	1.00[EUR][1000 genomes]
rs6897507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897639	1.00[EUR][1000 genomes]
rs73786638	1.00[EUR][1000 genomes]
rs73786639	1.00[EUR][1000 genomes]
rs73786643	1.00[EUR][1000 genomes]
rs73786644	1.00[EUR][1000 genomes]
rs73786646	1.00[EUR][1000 genomes]
rs73786648	1.00[EUR][1000 genomes]
rs73786649	1.00[EUR][1000 genomes]
rs73786650	1.00[EUR][1000 genomes]
rs73786651	1.00[EUR][1000 genomes]
rs73786652	1.00[EUR][1000 genomes]
rs73786653	1.00[EUR][1000 genomes]
rs73786654	1.00[EUR][1000 genomes]
rs73786656	1.00[EUR][1000 genomes]
rs73786659	1.00[EUR][1000 genomes]
rs73786660	1.00[EUR][1000 genomes]
rs73786665	1.00[EUR][1000 genomes]
rs73786668	1.00[EUR][1000 genomes]
rs73786670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786672	1.00[EUR][1000 genomes]
rs73786678	1.00[EUR][1000 genomes]
rs73786680	1.00[EUR][1000 genomes]
rs73786681	1.00[EUR][1000 genomes]
rs73786687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786688	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786689	1.00[EUR][1000 genomes]
rs73786692	1.00[EUR][1000 genomes]
rs73786694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786695	1.00[EUR][1000 genomes]
rs73786696	1.00[EUR][1000 genomes]
rs73786697	1.00[EUR][1000 genomes]
rs73788703	1.00[EUR][1000 genomes]
rs73788706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73788709	1.00[EUR][1000 genomes]
rs73788710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73788711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73788713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73788715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73788723	1.00[EUR][1000 genomes]
rs73788724	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73788728	1.00[EUR][1000 genomes]
rs73788729	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73788731	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73788758	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7730790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9765486	1.00[EUR][1000 genomes]
rs9784609	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9784615	1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAPGEF6	RNA binding protein mediated regulation
FNIP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)