SNP Report
Basic Infomation
| Name | rs9784615 dbSNP |
|---|---|
| Location | chr:5,130844046 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 43)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11242071 | 0.83[AMR][1000 genomes] |
| rs11242072 | 0.83[AMR][1000 genomes] |
| rs12108740 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12108819 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12108829 | 1.00[AMR][1000 genomes] |
| rs12108954 | 1.00[AMR][1000 genomes] |
| rs12109782 | 0.87[LWK][hapmap];1.00[AMR][1000 genomes] |
| rs12110164 | 1.00[AMR][1000 genomes] |
| rs12110184 | 0.83[AMR][1000 genomes] |
| rs17167682 | 1.00[AMR][1000 genomes] |
| rs17167683 | 1.00[AMR][1000 genomes] |
| rs4526097 | 1.00[AMR][1000 genomes] |
| rs55642088 | 1.00[AMR][1000 genomes] |
| rs55734376 | 1.00[AMR][1000 genomes] |
| rs55750965 | 1.00[AMR][1000 genomes] |
| rs55923765 | 1.00[AMR][1000 genomes] |
| rs55939271 | 1.00[AMR][1000 genomes] |
| rs56163891 | 1.00[AMR][1000 genomes] |
| rs56235343 | 1.00[AMR][1000 genomes] |
| rs56262921 | 1.00[AMR][1000 genomes] |
| rs56693198 | 1.00[AMR][1000 genomes] |
| rs57157881 | 1.00[AMR][1000 genomes] |
| rs57505395 | 1.00[AMR][1000 genomes] |
| rs57623245 | 1.00[AMR][1000 genomes] |
| rs58583866 | 1.00[AMR][1000 genomes] |
| rs58816971 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60418447 | 1.00[AMR][1000 genomes] |
| rs61216813 | 1.00[AMR][1000 genomes] |
| rs6859517 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6869375 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6878276 | 1.00[ASW][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6897507 | 1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs73786670 | 1.00[AMR][1000 genomes] |
| rs73786687 | 1.00[AMR][1000 genomes] |
| rs73786688 | 1.00[AMR][1000 genomes] |
| rs73786694 | 1.00[AMR][1000 genomes] |
| rs73788706 | 1.00[AMR][1000 genomes] |
| rs73788710 | 1.00[AMR][1000 genomes] |
| rs73788711 | 1.00[AMR][1000 genomes] |
| rs73788713 | 1.00[AMR][1000 genomes] |
| rs73788715 | 1.00[AMR][1000 genomes] |
| rs7730790 | 1.00[AMR][1000 genomes] |
| rs9784609 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAPGEF6 | Proximal transcriptional regulation |
| RAPGEF6 | Distal transcriptional regulation |
| RAPGEF6 | RNA binding protein mediated regulation |
| FNIP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014