SNP Report
Basic Infomation
| Name | rs11242071 dbSNP |
|---|---|
| Location | chr:5,130635032 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11242072 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11953301 | 0.83[AMR][1000 genomes] |
| rs11959672 | 0.83[AMR][1000 genomes] |
| rs12108740 | 0.83[AMR][1000 genomes] |
| rs12110184 | 1.00[AMR][1000 genomes] |
| rs13340335 | 1.00[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs17165973 | 0.83[AMR][1000 genomes] |
| rs17166026 | 0.83[AMR][1000 genomes] |
| rs17167458 | 0.83[AMR][1000 genomes] |
| rs17167499 | 0.83[AMR][1000 genomes] |
| rs17167511 | 0.83[AMR][1000 genomes] |
| rs17167539 | 0.83[AMR][1000 genomes] |
| rs17167550 | 0.83[AMR][1000 genomes] |
| rs17167682 | 0.83[AMR][1000 genomes] |
| rs17167683 | 0.83[AMR][1000 genomes] |
| rs2189778 | 0.83[AMR][1000 genomes] |
| rs55939271 | 0.83[AMR][1000 genomes] |
| rs56163891 | 0.83[AMR][1000 genomes] |
| rs56235343 | 0.83[AMR][1000 genomes] |
| rs56693198 | 0.83[AMR][1000 genomes] |
| rs6892745 | 0.83[AMR][1000 genomes] |
| rs6897210 | 0.83[AMR][1000 genomes] |
| rs6897507 | 0.83[AMR][1000 genomes] |
| rs73786670 | 0.83[AMR][1000 genomes] |
| rs73786687 | 0.83[AMR][1000 genomes] |
| rs73786688 | 0.83[AMR][1000 genomes] |
| rs73786694 | 0.83[AMR][1000 genomes] |
| rs7704697 | 0.83[AMR][1000 genomes] |
| rs9784609 | 0.83[AMR][1000 genomes] |
| rs9784615 | 0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC42SE2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014