SNP Report

Basic Infomation

Name	rs6897210 dbSNP
Location	chr:5,130731038
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 87)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1015557	1.00[EUR][1000 genomes]
rs1044402	1.00[EUR][1000 genomes]
rs11242071	0.83[AMR][1000 genomes]
rs11242072	0.83[AMR][1000 genomes]
rs11952538	1.00[EUR][1000 genomes]
rs11952747	1.00[EUR][1000 genomes]
rs11953301	0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11959672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110164	1.00[EUR][1000 genomes]
rs12110184	0.83[AMR][1000 genomes]
rs17165972	1.00[EUR][1000 genomes]
rs17167458	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17167499	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17167511	0.89[ASW][hapmap];1.00[AMR][1000 genomes]
rs17167539	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17167550	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17167682	1.00[EUR][1000 genomes]
rs17167683	1.00[EUR][1000 genomes]
rs2189778	1.00[AMR][1000 genomes]
rs4526097	1.00[EUR][1000 genomes]
rs55639617	1.00[EUR][1000 genomes]
rs55642088	1.00[EUR][1000 genomes]
rs55740493	1.00[EUR][1000 genomes]
rs55773458	1.00[EUR][1000 genomes]
rs55939271	1.00[EUR][1000 genomes]
rs56100851	1.00[EUR][1000 genomes]
rs56121529	1.00[EUR][1000 genomes]
rs56163891	1.00[EUR][1000 genomes]
rs56187427	1.00[EUR][1000 genomes]
rs56235343	1.00[EUR][1000 genomes]
rs56262921	1.00[EUR][1000 genomes]
rs56693198	1.00[EUR][1000 genomes]
rs56796052	1.00[EUR][1000 genomes]
rs57505395	1.00[EUR][1000 genomes]
rs57700693	1.00[EUR][1000 genomes]
rs57727293	1.00[EUR][1000 genomes]
rs58816971	1.00[EUR][1000 genomes]
rs60527956	1.00[EUR][1000 genomes]
rs60745360	1.00[EUR][1000 genomes]
rs60844708	1.00[EUR][1000 genomes]
rs61216813	1.00[EUR][1000 genomes]
rs61483560	1.00[EUR][1000 genomes]
rs6873136	1.00[EUR][1000 genomes]
rs6892745	1.00[AMR][1000 genomes]
rs6897507	1.00[EUR][1000 genomes]
rs6897639	1.00[EUR][1000 genomes]
rs73786622	1.00[EUR][1000 genomes]
rs73786624	1.00[EUR][1000 genomes]
rs73786625	1.00[EUR][1000 genomes]
rs73786634	1.00[EUR][1000 genomes]
rs73786638	1.00[EUR][1000 genomes]
rs73786639	1.00[EUR][1000 genomes]
rs73786643	1.00[EUR][1000 genomes]
rs73786644	1.00[EUR][1000 genomes]
rs73786646	1.00[EUR][1000 genomes]
rs73786648	1.00[EUR][1000 genomes]
rs73786649	1.00[EUR][1000 genomes]
rs73786650	1.00[EUR][1000 genomes]
rs73786651	1.00[EUR][1000 genomes]
rs73786652	1.00[EUR][1000 genomes]
rs73786653	1.00[EUR][1000 genomes]
rs73786654	1.00[EUR][1000 genomes]
rs73786656	1.00[EUR][1000 genomes]
rs73786659	1.00[EUR][1000 genomes]
rs73786660	1.00[EUR][1000 genomes]
rs73786665	1.00[EUR][1000 genomes]
rs73786668	1.00[EUR][1000 genomes]
rs73786670	1.00[EUR][1000 genomes]
rs73786672	1.00[EUR][1000 genomes]
rs73786678	1.00[EUR][1000 genomes]
rs73786680	1.00[EUR][1000 genomes]
rs73786681	1.00[EUR][1000 genomes]
rs73786687	1.00[EUR][1000 genomes]
rs73786689	1.00[EUR][1000 genomes]
rs73786692	1.00[EUR][1000 genomes]
rs73786694	1.00[EUR][1000 genomes]
rs73786695	1.00[EUR][1000 genomes]
rs73786696	1.00[EUR][1000 genomes]
rs73786697	1.00[EUR][1000 genomes]
rs73788703	1.00[EUR][1000 genomes]
rs73788706	1.00[EUR][1000 genomes]
rs73788709	1.00[EUR][1000 genomes]
rs73788710	1.00[EUR][1000 genomes]
rs73788711	1.00[EUR][1000 genomes]
rs73788713	1.00[EUR][1000 genomes]
rs73788715	1.00[EUR][1000 genomes]
rs7704697	1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDC42SE2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)