SNP Report
Basic Infomation
| Name | rs1015557 dbSNP |
|---|---|
| Location | chr:5,130522490 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11952538 | 0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11952747 | 1.00[EUR][1000 genomes] |
| rs11953301 | 1.00[EUR][1000 genomes] |
| rs17165965 | 1.00[AMR][1000 genomes] |
| rs17165972 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17167499 | 1.00[EUR][1000 genomes] |
| rs55639617 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55740493 | 1.00[EUR][1000 genomes] |
| rs55773458 | 1.00[EUR][1000 genomes] |
| rs57700693 | 1.00[EUR][1000 genomes] |
| rs60527956 | 1.00[EUR][1000 genomes] |
| rs60745360 | 1.00[EUR][1000 genomes] |
| rs6873136 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6897210 | 1.00[EUR][1000 genomes] |
| rs6897639 | 1.00[EUR][1000 genomes] |
| rs73786615 | 1.00[EUR][1000 genomes] |
| rs73786622 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73786624 | 1.00[EUR][1000 genomes] |
| rs73786625 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73786634 | 1.00[EUR][1000 genomes] |
| rs73786638 | 1.00[EUR][1000 genomes] |
| rs73786639 | 1.00[EUR][1000 genomes] |
| rs73786643 | 1.00[EUR][1000 genomes] |
| rs73786644 | 1.00[EUR][1000 genomes] |
| rs73786646 | 1.00[EUR][1000 genomes] |
| rs73786648 | 1.00[EUR][1000 genomes] |
| rs73786649 | 1.00[EUR][1000 genomes] |
| rs73786650 | 1.00[EUR][1000 genomes] |
| rs73786651 | 1.00[EUR][1000 genomes] |
| rs73786652 | 1.00[EUR][1000 genomes] |
| rs73786653 | 1.00[EUR][1000 genomes] |
| rs73786654 | 1.00[EUR][1000 genomes] |
| rs73786656 | 1.00[EUR][1000 genomes] |
| rs73786659 | 1.00[EUR][1000 genomes] |
| rs73786660 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC42SE2 | Distal transcriptional regulation |
| LYRM7 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014