SNP Report
Basic Infomation
| Name | rs55923765 dbSNP |
|---|---|
| Location | chr:5,130973190 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 98)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1044402 | 1.00[EUR][1000 genomes] |
| rs12108740 | 1.00[AMR][1000 genomes] |
| rs12108819 | 1.00[AMR][1000 genomes] |
| rs12108829 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12108954 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12109782 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12110164 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17167682 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17167683 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4526097 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55642088 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55734376 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55746149 | 1.00[EUR][1000 genomes] |
| rs55750965 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55801827 | 1.00[EUR][1000 genomes] |
| rs55894225 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55939271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56012778 | 1.00[EUR][1000 genomes] |
| rs56100851 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56121529 | 1.00[EUR][1000 genomes] |
| rs56163891 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56187427 | 1.00[EUR][1000 genomes] |
| rs56225468 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56235343 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56262921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56293510 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56693198 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56796052 | 1.00[EUR][1000 genomes] |
| rs56867565 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56962869 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57101164 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57102410 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57157881 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57505395 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57623245 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57727293 | 1.00[EUR][1000 genomes] |
| rs57925080 | 0.84[AFR][1000 genomes] |
| rs58222800 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58583866 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58816971 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58993531 | 0.90[AFR][1000 genomes] |
| rs60418447 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60844708 | 1.00[EUR][1000 genomes] |
| rs61077793 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61122547 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61216813 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61221333 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61431748 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61483560 | 1.00[EUR][1000 genomes] |
| rs6859517 | 1.00[AMR][1000 genomes] |
| rs6869375 | 1.00[AMR][1000 genomes] |
| rs6878276 | 1.00[AMR][1000 genomes] |
| rs6897008 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6897507 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73786665 | 1.00[EUR][1000 genomes] |
| rs73786668 | 1.00[EUR][1000 genomes] |
| rs73786670 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73786672 | 1.00[EUR][1000 genomes] |
| rs73786678 | 1.00[EUR][1000 genomes] |
| rs73786680 | 1.00[EUR][1000 genomes] |
| rs73786681 | 1.00[EUR][1000 genomes] |
| rs73786687 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73786688 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73786689 | 1.00[EUR][1000 genomes] |
| rs73786692 | 1.00[EUR][1000 genomes] |
| rs73786694 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73786695 | 1.00[EUR][1000 genomes] |
| rs73786696 | 1.00[EUR][1000 genomes] |
| rs73786697 | 1.00[EUR][1000 genomes] |
| rs73788703 | 1.00[EUR][1000 genomes] |
| rs73788706 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788709 | 1.00[EUR][1000 genomes] |
| rs73788710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788711 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788713 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788715 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788723 | 1.00[EUR][1000 genomes] |
| rs73788724 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788728 | 1.00[EUR][1000 genomes] |
| rs73788729 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788731 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788758 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788765 | 1.00[EUR][1000 genomes] |
| rs73788766 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788769 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788770 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788772 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788773 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788774 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788775 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73788781 | 1.00[EUR][1000 genomes] |
| rs73788782 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7708521 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7709146 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7730790 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9765486 | 1.00[EUR][1000 genomes] |
| rs9784609 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9784615 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAPGEF6 | Proximal transcriptional regulation |
| RAPGEF6 | Distal transcriptional regulation |
| FNIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014