SNP Report
Name | rs3743406   dbSNP |
---|---|
Location | chr:15,91161548 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10438437 | 0.80[CEU][hapmap] |
rs10520692 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11631150 | 0.81[AMR][1000 genomes] |
rs11631439 | 0.95[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11636571 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11636695 | 0.90[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12593759 | 0.86[MEX][hapmap] |
rs13379889 | 0.90[CHB][hapmap];0.89[CHD][hapmap] |
rs16944699 | 0.90[CHB][hapmap] |
rs16944702 | 0.81[GIH][hapmap] |
rs17180057 | 0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs35248424 | 0.81[ASN][1000 genomes] |
rs3743401 | 0.90[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.90[MEX][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs4261511 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4476150 | 0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4641716 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs4932175 | 0.80[CEU][hapmap] |
rs4932350 | 0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4932351 | 0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4932352 | 0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4932353 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs4932355 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4932357 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs5011653 | 0.80[LWK][hapmap] |
rs6416557 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs6496701 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6496702 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6496703 | 0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6496712 | 0.81[AMR][1000 genomes] |
rs6496713 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6496717 | 0.84[CHB][hapmap];0.82[AMR][1000 genomes] |
rs7163189 | 0.85[CEU][hapmap] |
rs7163773 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7165429 | 0.90[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7165476 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7171218 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7176303 | 0.80[CEU][hapmap] |
rs7179095 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
rs8026105 | 0.81[AMR][1000 genomes] |
rs8026218 | 0.95[CEU][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs8026682 | 0.95[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes] |
rs8028854 | 0.83[TSI][hapmap] |
rs8030781 | 0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs8035793 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9652517 | 0.85[CEU][hapmap] |
rs9888660 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000259314 | Proximal transcriptional regulation |
ENSG00000259314 | Distal transcriptional regulation |
CRTC3 | Distal transcriptional regulation |
CRTC3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014