SNP Report
Basic Infomation
| Name | rs16944702 dbSNP |
|---|---|
| Location | chr:15,91192738 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11631439 | 0.81[GIH][hapmap] |
| rs11636695 | 0.83[CHD][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap] |
| rs12592070 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12593759 | 0.93[GIH][hapmap] |
| rs13379889 | 0.82[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16944699 | 0.93[CEU][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17180057 | 0.80[JPT][hapmap] |
| rs2010673 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35248424 | 0.88[ASN][1000 genomes] |
| rs3743401 | 0.82[CHD][hapmap];0.87[GIH][hapmap];0.88[ASN][1000 genomes] |
| rs3743406 | 0.81[GIH][hapmap] |
| rs7165429 | 0.83[CHD][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap] |
| rs7179095 | 0.86[CEU][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs8026682 | 0.81[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FURIN | Distal transcriptional regulation |
| ENSG00000245479 | Distal transcriptional regulation |
| ENSG00000259736 | Distal transcriptional regulation |
| BLM | Distal transcriptional regulation |
| ENSG00000259260 | Distal transcriptional regulation |
| FES | Distal transcriptional regulation |
| HDDC3 | Distal transcriptional regulation |
| MAN2A2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014