SNP Report
Basic Infomation
| Name | rs7179095 dbSNP |
|---|---|
| Location | chr:15,91186461 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10520692 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs12592070 | 0.90[ASN][1000 genomes] |
| rs13379889 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs16944699 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs16944702 | 0.86[CEU][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2010673 | 0.81[ASN][1000 genomes] |
| rs35248424 | 0.97[ASN][1000 genomes] |
| rs3743401 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs3743406 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs4476150 | 0.85[YRI][hapmap] |
| rs6416557 | 0.89[ASN][1000 genomes] |
| rs6496712 | 0.84[ASN][1000 genomes] |
| rs6496713 | 0.84[ASN][1000 genomes] |
| rs6496717 | 0.95[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs8035793 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| ENSG00000259736 | RNA binding protein mediated regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014