SNP Report
Name | rs10520692   dbSNP |
---|---|
Location | chr:15,91154471 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10438437 | 0.85[CEU][hapmap] |
rs11631150 | 0.85[AMR][1000 genomes] |
rs11631439 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11636571 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11636695 | 0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12903655 | 0.85[CEU][hapmap] |
rs12904055 | 0.87[CEU][hapmap] |
rs13379889 | 0.90[CHB][hapmap] |
rs16944699 | 0.90[CHB][hapmap] |
rs17180057 | 0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs35248424 | 0.82[ASN][1000 genomes] |
rs3743401 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs3743406 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4261511 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4454949 | 0.81[CEU][hapmap] |
rs4476150 | 0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4641716 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4932175 | 0.87[CEU][hapmap] |
rs4932350 | 1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4932351 | 1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4932352 | 0.81[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4932353 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4932355 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4932357 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6416557 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs6496701 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6496702 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6496703 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6496712 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs6496713 | 0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs6496717 | 0.84[CHB][hapmap];0.86[AMR][1000 genomes] |
rs7163189 | 0.91[CEU][hapmap] |
rs7163773 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7165429 | 0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7165476 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7171218 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7176303 | 0.85[CEU][hapmap] |
rs7179095 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
rs8026105 | 0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs8026218 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs8026682 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
rs8030781 | 1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs8035793 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9652517 | 0.90[CEU][hapmap] |
rs9888660 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
CRTC3 | Proximal transcriptional regulation |
ENSG00000259314 | Distal transcriptional regulation |
ENSG00000259314 | RNA binding protein mediated regulation |
CRTC3 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ESPNL | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014