SNP Report
Name | rs7171218   dbSNP |
---|---|
Location | chr:15,91152085 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10520692 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11631439 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11636571 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11636695 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17180057 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3743406 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4244880 | 0.80[AFR][1000 genomes] |
rs4244882 | 0.82[AFR][1000 genomes] |
rs4261511 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4476150 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4609824 | 0.83[AFR][1000 genomes] |
rs4641716 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs4932175 | 0.82[AFR][1000 genomes] |
rs4932350 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4932351 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4932352 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4932353 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4932355 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4932357 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6496701 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6496702 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs6496703 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7163773 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7165429 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7165476 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7176303 | 0.81[AFR][1000 genomes] |
rs8026218 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs8026682 | 0.91[EUR][1000 genomes] |
rs8030781 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs8035793 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs9888660 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CRTC3 | Proximal transcriptional regulation |
CRTC3 | Distal transcriptional regulation |
ENSG00000259314 | RNA binding protein mediated regulation |
CRTC3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014