SNP Report
Basic Infomation
| Name | rs9888660 dbSNP |
|---|---|
| Location | chr:15,91160768 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10520692 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11631439 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11636571 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11636695 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12909526 | 0.81[AMR][1000 genomes] |
| rs17180057 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3743406 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4261511 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4476150 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4641716 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4932350 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4932351 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4932352 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4932353 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4932355 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4932357 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6496701 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6496702 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6496703 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7163773 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7165429 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7165476 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7171218 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8026218 | 0.87[EUR][1000 genomes] |
| rs8026682 | 0.87[EUR][1000 genomes] |
| rs8030781 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs8035793 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259314 | Proximal transcriptional regulation |
| ENSG00000259314 | Distal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014