SNP Report
Basic Infomation
| Name | rs6496701 dbSNP |
|---|---|
| Location | chr:15,91144601 |
| Allele | G/A/C |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10520692 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11631150 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11631439 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11636571 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11636695 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16944613 | 0.87[ASN][1000 genomes] |
| rs17180057 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3743406 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4261511 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4476150 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4641716 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4932350 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4932351 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4932352 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4932353 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4932355 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4932357 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs55767443 | 0.85[ASN][1000 genomes] |
| rs6496702 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6496703 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6496712 | 0.82[AMR][1000 genomes] |
| rs7163189 | 0.82[AFR][1000 genomes] |
| rs7163773 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7165429 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7165476 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7171218 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs8026105 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8026218 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8026682 | 0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8028854 | 0.87[ASN][1000 genomes] |
| rs8030781 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8035793 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9652517 | 0.87[AFR][1000 genomes] |
| rs9888660 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259212 | Proximal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| ENSG00000259314 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014