SNP Report
Basic Infomation
| Name | rs12592070 dbSNP |
|---|---|
| Location | chr:15,91197016 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083558 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12438266 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12442284 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12593759 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13379889 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16944699 | 0.87[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16944702 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2010673 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34601005 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35248424 | 0.89[ASN][1000 genomes] |
| rs3743401 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs5011651 | 0.81[EUR][1000 genomes] |
| rs5011652 | 0.81[EUR][1000 genomes] |
| rs6416557 | 0.80[ASN][1000 genomes] |
| rs6496712 | 0.80[EUR][1000 genomes] |
| rs6496717 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7179095 | 0.90[ASN][1000 genomes] |
| rs7495683 | 0.85[EUR][1000 genomes] |
| rs7497923 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259736 | Distal transcriptional regulation |
| BLM | Distal transcriptional regulation |
| FURIN | Distal transcriptional regulation |
| ENSG00000245479 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014