SNP Report
Basic Infomation
| Name | rs10083558 dbSNP |
|---|---|
| Location | chr:15,91202504 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11631150 | 0.81[CEU][hapmap] |
| rs12437503 | 0.84[CEU][hapmap] |
| rs12438266 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12442284 | 0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12592070 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12593759 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12906864 | 0.87[CEU][hapmap] |
| rs12915979 | 0.83[CEU][hapmap] |
| rs13379889 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2010673 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34601005 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3743401 | 1.00[CEU][hapmap] |
| rs4516207 | 0.89[CEU][hapmap] |
| rs6496717 | 0.82[CEU][hapmap] |
| rs7165170 | 0.83[CEU][hapmap] |
| rs7495683 | 0.87[EUR][1000 genomes] |
| rs7497923 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000245479 | Proximal transcriptional regulation |
| UNC45A | Distal transcriptional regulation |
| HDDC3 | Distal transcriptional regulation |
| BLM | Distal transcriptional regulation |
| ENSG00000259736 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| DIP2A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014