SNP Report
Basic Infomation
| Name | rs12442284 dbSNP |
|---|---|
| Location | chr:15,91209433 |
| Allele | T/G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083558 | 0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11631150 | 0.80[CEU][hapmap] |
| rs12437503 | 0.94[CEU][hapmap] |
| rs12438266 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12592070 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12593759 | 0.94[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12906864 | 0.93[CEU][hapmap] |
| rs13379889 | 0.94[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs16944613 | 0.89[CEU][hapmap] |
| rs2010673 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3743401 | 0.94[CEU][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap] |
| rs4482257 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4516207 | 0.83[CEU][hapmap] |
| rs6496717 | 0.82[CEU][hapmap] |
| rs7166173 | 0.89[CEU][hapmap] |
| rs7173175 | 0.88[CEU][hapmap] |
| rs7497923 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8031714 | 0.88[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| MAN2A2 | Distal transcriptional regulation |
| ENSG00000259260 | Distal transcriptional regulation |
| FES | Distal transcriptional regulation |
| FURIN | Distal transcriptional regulation |
| HDDC3 | Distal transcriptional regulation |
| RCCD1 | Distal transcriptional regulation |
| ENSG00000258384 | Distal transcriptional regulation |
| ENSG00000259736 | Distal transcriptional regulation |
| BLM | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014