SNP Report
Basic Infomation
| Name | rs3092169 dbSNP |
|---|---|
| Location | chr:20,44702086 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1128536 | 0.87[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs13037326 | 0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1406826 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1406827 | 0.93[ASN][1000 genomes] |
| rs1537028 | 0.88[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1569722 | 0.88[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2425751 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2425752 | 0.81[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2425753 | 0.94[ASN][1000 genomes] |
| rs2868764 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3091794 | 0.87[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs3092502 | 0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35175715 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4455229 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4812991 | 0.82[ASN][1000 genomes] |
| rs4812992 | 0.82[ASN][1000 genomes] |
| rs4812994 | 0.85[AMR][1000 genomes] |
| rs6017733 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6017734 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6032644 | 0.94[ASN][1000 genomes] |
| rs6032655 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6074012 | 0.82[CHD][hapmap];0.81[JPT][hapmap] |
| rs6074013 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6074015 | 0.88[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6104456 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6131010 | 0.81[CHB][hapmap];0.90[CHD][hapmap] |
| rs9074 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014