SNP Report
Name | rs4812991   dbSNP |
---|---|
Location | chr:20,44721540 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1128536 | 0.86[ASN][1000 genomes] |
rs1406826 | 0.84[ASN][1000 genomes] |
rs1406827 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1537028 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1569722 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2297200 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2425751 | 0.80[ASN][1000 genomes] |
rs2425753 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2868764 | 0.92[ASN][1000 genomes] |
rs3091794 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs3092169 | 0.82[ASN][1000 genomes] |
rs3092502 | 0.80[ASN][1000 genomes] |
rs4455229 | 0.92[ASN][1000 genomes] |
rs4812992 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4812994 | 0.81[ASN][1000 genomes] |
rs6017733 | 0.84[ASN][1000 genomes] |
rs6017734 | 0.92[ASN][1000 genomes] |
rs6032644 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6032655 | 0.89[ASN][1000 genomes] |
rs6074013 | 0.83[ASN][1000 genomes] |
rs6074015 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6104456 | 0.81[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
NCOA5 | Proximal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014