SNP Report
Basic Infomation
| Name | rs6104456 dbSNP |
|---|---|
| Location | chr:20,44718231 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1406826 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1406827 | 0.81[ASN][1000 genomes] |
| rs1569722 | 0.81[ASN][1000 genomes] |
| rs2425751 | 0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2425753 | 0.81[ASN][1000 genomes] |
| rs2868764 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3091794 | 0.81[ASN][1000 genomes] |
| rs3092169 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3092502 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs35175715 | 0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4455229 | 0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4812991 | 0.81[ASN][1000 genomes] |
| rs4812992 | 0.81[ASN][1000 genomes] |
| rs4812994 | 0.86[AMR][1000 genomes] |
| rs6017733 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6017734 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6032644 | 0.81[ASN][1000 genomes] |
| rs6032655 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6074013 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6074015 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EPHA2 | Distal transcriptional regulation |
| MRPS16 | Distal transcriptional regulation |
| ENSG00000227540 | Distal transcriptional regulation |
| STX5 | Distal transcriptional regulation |
| ADAM10 | Distal transcriptional regulation |
| PHF23 | Distal transcriptional regulation |
| ANXA1 | Distal transcriptional regulation |
| TOMM34 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| CD40 | Distal transcriptional regulation |
| SYS1 | Distal transcriptional regulation |
| SYS1-DBNDD2 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014