SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 22)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1406826	0.87[ASN][1000 genomes]
rs1406827	0.98[ASN][1000 genomes]
rs1537028	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs1569722	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs2425751	0.91[ASN][1000 genomes]
rs2425752	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs2425753	0.99[ASN][1000 genomes]
rs2868764	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs3091794	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3092169	0.87[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs3092502	0.91[ASN][1000 genomes]
rs35175715	0.92[ASN][1000 genomes]
rs4812991	0.86[ASN][1000 genomes]
rs4812992	0.86[ASN][1000 genomes]
rs6017733	0.86[ASN][1000 genomes]
rs6017734	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs6032644	0.99[ASN][1000 genomes]
rs6032655	0.82[ASN][1000 genomes]
rs6074012	0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs6074013	0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs6074015	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs6131010	0.81[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
SLC12A5	Proximal transcriptional regulation
NCOA5	Distal transcriptional regulation
SLC12A5	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)