SNP Report
Basic Infomation
| Name | rs6074012 dbSNP |
|---|---|
| Location | chr:20,44700166 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1128536 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs13037326 | 0.88[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1406827 | 0.86[ASN][1000 genomes] |
| rs1537028 | 0.82[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs1569722 | 0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap] |
| rs2425752 | 0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2425753 | 0.85[ASN][1000 genomes] |
| rs3091794 | 0.81[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3092169 | 0.82[CHD][hapmap];0.81[JPT][hapmap] |
| rs6032644 | 0.87[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6074013 | 0.81[JPT][hapmap] |
| rs6074015 | 0.82[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6131010 | 0.86[CHB][hapmap];0.82[CHD][hapmap] |
| rs9074 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014