SNP Report
Basic Infomation
| Name | rs13037326 dbSNP |
|---|---|
| Location | chr:20,44692598 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12624433 | 0.94[CEU][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2425751 | 0.85[ASN][1000 genomes] |
| rs2425752 | 0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2868764 | 0.83[JPT][hapmap] |
| rs3092169 | 0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs3092502 | 0.85[ASN][1000 genomes] |
| rs35175715 | 0.85[ASN][1000 genomes] |
| rs3848726 | 1.00[YRI][hapmap] |
| rs4578918 | 0.92[EUR][1000 genomes] |
| rs6017734 | 0.83[JPT][hapmap] |
| rs6074012 | 0.88[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6074013 | 0.89[JPT][hapmap] |
| rs6074015 | 0.82[JPT][hapmap] |
| rs6131010 | 0.94[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9074 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014