SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1128536	0.81[CHD][hapmap]
rs12624433	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13037326	0.94[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1537028	0.81[CHD][hapmap]
rs1569722	0.83[CHD][hapmap]
rs1569723	0.83[GIH][hapmap];0.82[JPT][hapmap]
rs1883832	0.83[GIH][hapmap];0.82[JPT][hapmap]
rs2425752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2868764	0.81[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3092169	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs3848726	1.00[YRI][hapmap]
rs4239702	0.80[GIH][hapmap];0.82[JPT][hapmap]
rs4455229	0.85[ASN][1000 genomes]
rs4578918	0.98[EUR][1000 genomes]
rs4810485	0.85[GIH][hapmap];0.82[JPT][hapmap]
rs6017734	0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6032655	0.82[ASN][1000 genomes]
rs6032662	0.82[JPT][hapmap]
rs6032664	0.82[JPT][hapmap]
rs6074012	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs6074013	0.81[CHB][hapmap]
rs6074015	0.81[CHD][hapmap]
rs6074022	0.83[GIH][hapmap];0.82[JPT][hapmap]
rs9074	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RPL13P2	Proximal transcriptional regulation
NCOA5	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 6)