SNP Report
Basic Infomation
| Name | rs9074 dbSNP |
|---|---|
| Location | chr:20,44688665 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12624433 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13037326 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1406826 | 0.80[ASN][1000 genomes] |
| rs2425751 | 0.86[ASN][1000 genomes] |
| rs2425752 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3092169 | 0.85[ASN][1000 genomes] |
| rs3092502 | 0.86[ASN][1000 genomes] |
| rs35175715 | 0.86[ASN][1000 genomes] |
| rs4578918 | 0.92[EUR][1000 genomes] |
| rs6074012 | 0.91[ASN][1000 genomes] |
| rs6131010 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC12A5 | Proximal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| SLC12A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014