SNP Report
Basic Infomation
| Name | rs2731092 dbSNP |
|---|---|
| Location | chr:12,48880550 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1807757 | 0.92[CEU][hapmap];0.84[TSI][hapmap] |
| rs2705124 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap] |
| rs2705125 | 0.89[CHB][hapmap] |
| rs2705127 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2705130 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2705131 | 0.82[AFR][1000 genomes] |
| rs2705133 | 0.82[YRI][hapmap] |
| rs2731063 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap] |
| rs2731066 | 0.81[YRI][hapmap] |
| rs2731091 | 0.84[CEU][hapmap];0.83[TSI][hapmap] |
| rs2731094 | 0.84[CEU][hapmap];0.83[TSI][hapmap] |
| rs2731096 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs2731099 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731100 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731102 | 0.84[CEU][hapmap] |
| rs2731103 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731105 | 0.90[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap] |
| rs2731106 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731108 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2956467 | 0.84[CEU][hapmap] |
| rs4369449 | 0.80[CHB][hapmap] |
| rs4492859 | 0.83[GIH][hapmap] |
| rs7139348 | 0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7294585 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7309958 | 0.90[CHB][hapmap];0.81[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf54 | Proximal transcriptional regulation |
| RPS10P20 | Proximal transcriptional regulation |
| C12orf54 | Distal transcriptional regulation |
| ENSG00000258121 | RNA binding protein mediated regulation |
| C12orf54 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014