SNP Report
Basic Infomation
| Name | rs2731102 dbSNP |
|---|---|
| Location | chr:12,48884535 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747547 | 0.85[EUR][1000 genomes] |
| rs11168599 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs11168637 | 0.94[JPT][hapmap] |
| rs11458 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs12371700 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs12815544 | 0.83[CHB][hapmap];0.94[JPT][hapmap] |
| rs2114322 | 1.00[JPT][hapmap] |
| rs2705132 | 0.80[YRI][hapmap] |
| rs2731091 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2731092 | 0.84[CEU][hapmap] |
| rs2731094 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
| rs2731095 | 0.93[EUR][1000 genomes] |
| rs2731097 | 0.93[EUR][1000 genomes] |
| rs2731099 | 0.84[CEU][hapmap] |
| rs2731106 | 0.80[CEU][hapmap] |
| rs2731107 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2956467 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs7139348 | 0.84[CEU][hapmap] |
| rs7294341 | 0.86[EUR][1000 genomes] |
| rs7294585 | 0.84[CEU][hapmap] |
| rs7312017 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs7958521 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs7974213 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf54 | Proximal transcriptional regulation |
| RPS10P20 | Distal transcriptional regulation |
| C12orf54 | Distal transcriptional regulation |
| ENSG00000258121 | RNA binding protein mediated regulation |
| C12orf54 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014