SNP Report
Basic Infomation
| Name | rs7312017 dbSNP |
|---|---|
| Location | chr:12,48954225 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875833 | 0.86[ASN][1000 genomes] |
| rs11168599 | 0.94[JPT][hapmap] |
| rs11168637 | 0.84[CHB][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.86[ASN][1000 genomes] |
| rs11458 | 0.94[JPT][hapmap] |
| rs12371700 | 0.94[JPT][hapmap] |
| rs12815544 | 0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1807757 | 0.83[TSI][hapmap] |
| rs1895996 | 0.84[ASN][1000 genomes] |
| rs2114322 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2731091 | 0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap] |
| rs2731094 | 0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap] |
| rs2731102 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs2956467 | 0.89[CEU][hapmap] |
| rs7958521 | 0.94[JPT][hapmap] |
| rs7974213 | 0.94[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000198678 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014