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rVarBase
SNP Report
Basic Infomation
Name
rs10875833  
dbSNP
Location
chr:12,48953368
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11168599
0.83[EUR][1000 genomes]
rs11168637
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11458
0.86[EUR][1000 genomes]
rs12371700
0.91[EUR][1000 genomes]
rs12815151
0.82[EUR][1000 genomes]
rs12815544
0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895996
0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2114322
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7302209
0.90[EUR][1000 genomes]
rs7312017
0.86[ASN][1000 genomes]
rs7958521
0.82[EUR][1000 genomes]
rs7972785
0.82[EUR][1000 genomes]
rs7974213
0.83[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000198678
Proximal transcriptional regulation
OR8S1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)