SNP Report
Basic Infomation
| Name | rs2956467 dbSNP |
|---|---|
| Location | chr:12,48853239 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747547 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12371700 | 0.81[ASN][1000 genomes] |
| rs12815151 | 0.81[ASN][1000 genomes] |
| rs2731091 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2731092 | 0.84[CEU][hapmap] |
| rs2731094 | 1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2731095 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2731097 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2731099 | 0.85[CEU][hapmap] |
| rs2731102 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs2731106 | 0.81[CEU][hapmap] |
| rs2731107 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35338015 | 0.81[ASN][1000 genomes] |
| rs6580671 | 0.83[ASN][1000 genomes] |
| rs7139348 | 0.84[CEU][hapmap] |
| rs7294341 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7294585 | 0.84[CEU][hapmap] |
| rs7312017 | 0.89[CEU][hapmap] |
| rs7972785 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf54 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014