SNP Report
Basic Infomation
| Name | rs2731107 dbSNP |
|---|---|
| Location | chr:12,48887159 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747547 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11168599 | 0.85[ASN][1000 genomes] |
| rs11458 | 0.85[ASN][1000 genomes] |
| rs12371700 | 0.83[ASN][1000 genomes] |
| rs12815151 | 0.83[ASN][1000 genomes] |
| rs2731091 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731094 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731095 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731097 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2731102 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2956467 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57444623 | 0.84[ASN][1000 genomes] |
| rs7294341 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7302209 | 0.85[ASN][1000 genomes] |
| rs7958521 | 0.85[ASN][1000 genomes] |
| rs7972785 | 0.83[ASN][1000 genomes] |
| rs7974213 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf54 | Distal transcriptional regulation |
| RPS10P20 | Distal transcriptional regulation |
| ENSG00000258121 | RNA binding protein mediated regulation |
| C12orf54 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014