SNP Report
Basic Infomation
| Name | rs7294585 dbSNP |
|---|---|
| Location | chr:12,48837534 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1807757 | 0.91[CEU][hapmap] |
| rs2705127 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2705130 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2731063 | 0.92[YRI][hapmap] |
| rs2731091 | 0.84[CEU][hapmap] |
| rs2731092 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2731094 | 0.84[CEU][hapmap] |
| rs2731099 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2731100 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2731102 | 0.84[CEU][hapmap] |
| rs2731103 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2731106 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2731108 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2956467 | 0.84[CEU][hapmap] |
| rs7139348 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8T1P | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014