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rVarBase
SNP Report
Basic Infomation
Name
rs1807757  
dbSNP
Location
chr:12,48954040
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2731092
0.92[CEU][hapmap];0.84[TSI][hapmap]
rs2731099
0.91[CEU][hapmap]
rs2731106
0.89[CEU][hapmap]
rs7139348
0.92[CEU][hapmap];0.82[TSI][hapmap]
rs7294585
0.91[CEU][hapmap]
rs7312017
0.83[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
OR8S1
Distal transcriptional regulation
ENSG00000198678
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
C12orf54
seeQTL