SNP Report
Basic Infomation
| Name | rs6580671 dbSNP |
|---|---|
| Location | chr:12,48841057 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747547 | 0.83[ASN][1000 genomes] |
| rs11168599 | 1.00[CEU][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11168637 | 0.92[CEU][hapmap] |
| rs11458 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12371700 | 0.96[CEU][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12815151 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12815544 | 0.92[CEU][hapmap] |
| rs2114322 | 0.93[CEU][hapmap] |
| rs2956467 | 0.83[ASN][1000 genomes] |
| rs35338015 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs57444623 | 0.90[ASN][1000 genomes] |
| rs7294341 | 0.83[ASN][1000 genomes] |
| rs7302209 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7958521 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7972785 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7974213 | 0.92[CEU][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8T1P | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014