SNP Report

Basic Infomation

Name	rs2731066 dbSNP
Location	chr:12,48898563
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168573	0.82[ASN][1000 genomes]
rs11168584	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs11168601	0.85[ASN][1000 genomes]
rs11608260	0.85[ASN][1000 genomes]
rs11612896	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11829869	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11830068	0.81[ASN][1000 genomes]
rs11832205	0.81[ASN][1000 genomes]
rs11832311	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs17123105	0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs17123106	0.85[ASN][1000 genomes]
rs17123108	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2068293	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2468348	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2705133	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs2705157	0.81[AFR][1000 genomes]
rs2705165	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2731074	0.94[CHB][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2731075	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2731092	0.81[YRI][hapmap]
rs4146339	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs4146340	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4237857	0.94[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4265629	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4344535	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4351855	0.84[ASN][1000 genomes]
rs4500527	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4550263	0.83[ASN][1000 genomes]
rs4551813	0.85[ASN][1000 genomes]
rs4620769	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4760709	0.85[ASN][1000 genomes]
rs4760712	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs56796388	0.81[ASN][1000 genomes]
rs72644865	0.82[ASN][1000 genomes]
rs72644868	0.85[ASN][1000 genomes]
rs7488935	0.85[ASN][1000 genomes]
rs7956679	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7966826	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9705570	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
OR8S1	Proximal transcriptional regulation
ENSG00000258121	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)