SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875832	0.85[EUR][1000 genomes]
rs11168572	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11612896	0.89[CHB][hapmap]
rs11829869	0.89[CHB][hapmap]
rs11832311	0.89[CHB][hapmap]
rs17123105	0.88[CHB][hapmap]
rs17123108	0.83[CHB][hapmap]
rs2068293	0.89[CHB][hapmap]
rs2468348	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2705124	0.81[YRI][hapmap]
rs2705125	0.81[YRI][hapmap]
rs2705133	0.80[LWK][hapmap]
rs2705157	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2705165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731066	0.94[CHB][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2731072	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2731075	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731105	0.81[YRI][hapmap]
rs4146339	0.89[CHB][hapmap]
rs4146340	0.93[CHB][hapmap]
rs4237857	0.89[CHB][hapmap]
rs4265629	0.89[CHB][hapmap]
rs4344535	0.89[CHB][hapmap]
rs4500527	0.89[CHB][hapmap]
rs4620769	0.89[CHB][hapmap]
rs4760712	0.89[CHB][hapmap]
rs7956679	0.89[CHB][hapmap]
rs7966826	0.89[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
OR8S1	Proximal transcriptional regulation
ENSG00000258121	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 4)