SNP Report
Basic Infomation
| Name | rs2705131 dbSNP |
|---|---|
| Location | chr:12,48887997 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2705124 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2705125 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2705127 | 0.84[AFR][1000 genomes] |
| rs2705130 | 0.85[AFR][1000 genomes] |
| rs2705134 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2731063 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2731092 | 0.82[AFR][1000 genomes] |
| rs2731096 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2731099 | 0.85[AFR][1000 genomes] |
| rs2731100 | 0.85[AFR][1000 genomes] |
| rs2731103 | 0.85[AFR][1000 genomes] |
| rs2731105 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2731106 | 0.85[AFR][1000 genomes] |
| rs2731108 | 0.85[AFR][1000 genomes] |
| rs34478996 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34801828 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs60006715 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7309958 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8S1 | Distal transcriptional regulation |
| ENSG00000258121 | RNA binding protein mediated regulation |
| C12orf54 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014