SNP Report
Basic Infomation
| Name | rs2705134 dbSNP |
|---|---|
| Location | chr:12,48889908 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747550 | 0.84[AMR][1000 genomes] |
| rs10783262 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1895999 | 0.82[AMR][1000 genomes] |
| rs2705124 | 0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2705125 | 0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2705131 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2705143 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2705156 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2731063 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2731096 | 0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2731105 | 0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2731111 | 0.96[AFR][1000 genomes] |
| rs34478996 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34801828 | 0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4492859 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs60006715 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7309958 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8S1 | Distal transcriptional regulation |
| ENSG00000258121 | RNA binding protein mediated regulation |
| C12orf54 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C12orf54 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014