SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10783262	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168624	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1895999	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2705124	0.93[CEU][hapmap];0.84[GIH][hapmap];0.85[TSI][hapmap]
rs2705125	0.93[CEU][hapmap]
rs2705134	0.84[AMR][1000 genomes]
rs2705143	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2705156	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2731063	0.93[CEU][hapmap];0.84[GIH][hapmap];0.85[TSI][hapmap]
rs2731096	0.93[CEU][hapmap];0.84[GIH][hapmap];0.85[TSI][hapmap]
rs2731105	0.93[CEU][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap]
rs4492859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7309958	0.93[CEU][hapmap]
rs7974371	0.93[CHB][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000198678	Proximal transcriptional regulation
OR8S1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 5)