SNP Report
Basic Infomation
| Name | rs7974371 dbSNP |
|---|---|
| Location | chr:12,48935730 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747550 | 0.93[CHB][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.85[ASN][1000 genomes] |
| rs10783262 | 0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11168624 | 0.86[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11611327 | 0.86[LWK][hapmap];0.90[YRI][hapmap] |
| rs12425460 | 0.86[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap] |
| rs1895999 | 0.81[ASW][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4492859 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR11M1P | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014