SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs26507	0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs27037	1.00[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs27038	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs27041	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs27043	0.88[GIH][hapmap]
rs27433	0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs27524	0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs27583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28081	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3822683	0.93[CHD][hapmap]
rs42398	0.88[GIH][hapmap]
rs57889668	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CAST	Proximal transcriptional regulation
CAST	Distal transcriptional regulation
LNPEP	Distal transcriptional regulation
ENSG00000247121	Distal transcriptional regulation
ERAP1	Distal transcriptional regulation
CAST	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 10)