SNP Report
Name | rs26492   dbSNP |
---|---|
Location | chr:5,96089111 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs26507 | 0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs27037 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs27038 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs27041 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes] |
rs27043 | 0.88[GIH][hapmap] |
rs27433 | 0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap] |
rs27524 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs27583 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs27689 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs28081 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3822683 | 0.93[CHD][hapmap] |
rs42398 | 0.88[GIH][hapmap] |
rs57889668 | 0.84[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CAST | Proximal transcriptional regulation |
CAST | Distal transcriptional regulation |
LNPEP | Distal transcriptional regulation |
ENSG00000247121 | Distal transcriptional regulation |
ERAP1 | Distal transcriptional regulation |
CAST | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014