SNP Report
Basic Infomation
| Name | rs27524 dbSNP |
|---|---|
| Location | chr:5,96101944 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs26491 | 0.80[CHB][hapmap] |
| rs26492 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs26507 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs27037 | 0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs27038 | 0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap] |
| rs27041 | 0.81[CHB][hapmap] |
| rs27583 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs27689 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs28081 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs30380 | 0.81[GIH][hapmap] |
| rs3822683 | 0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.82[MKK][hapmap];0.89[ASN][1000 genomes] |
| rs469758 | 0.82[GIH][hapmap] |
| rs57889668 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAST | Proximal transcriptional regulation |
| CAST | RNA binding protein mediated regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014