SNP Report
Name | rs27524   dbSNP |
---|---|
Location | chr:5,96101944 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs26491 | 0.80[CHB][hapmap] |
rs26492 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs26507 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs27037 | 0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
rs27038 | 0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap] |
rs27041 | 0.81[CHB][hapmap] |
rs27583 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs27689 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
rs28081 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs30380 | 0.81[GIH][hapmap] |
rs3822683 | 0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.82[MKK][hapmap];0.89[ASN][1000 genomes] |
rs469758 | 0.82[GIH][hapmap] |
rs57889668 | 0.93[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CAST | Proximal transcriptional regulation |
CAST | RNA binding protein mediated regulation |
ERAP1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014