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rVarBase
SNP Report
Basic Infomation
Name
rs57889668  
dbSNP
Location
chr:5,96080934
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs26492
0.84[ASN][1000 genomes]
rs26507
0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs27037
0.84[ASN][1000 genomes]
rs27524
0.93[ASN][1000 genomes]
rs27583
0.84[ASN][1000 genomes]
rs27689
0.81[ASN][1000 genomes]
rs28081
0.84[ASN][1000 genomes]
rs3822683
0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000249180
Proximal transcriptional regulation
CAST
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)