SNP Report
Name | rs26507   dbSNP |
---|---|
Location | chr:5,96080468 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs26491 | 0.80[CHB][hapmap] |
rs26492 | 0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs27037 | 0.82[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
rs27038 | 0.88[CHD][hapmap];0.86[JPT][hapmap] |
rs27524 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs27583 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs27689 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
rs28081 | 0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
rs30378 | 0.81[CHB][hapmap] |
rs3822683 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs57889668 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000249180 | Proximal transcriptional regulation |
ERAP1 | Distal transcriptional regulation |
CAST | Distal transcriptional regulation |
CAST | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014