SNP Report
Basic Infomation
| Name | rs26507 dbSNP |
|---|---|
| Location | chr:5,96080468 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs26491 | 0.80[CHB][hapmap] |
| rs26492 | 0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs27037 | 0.82[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs27038 | 0.88[CHD][hapmap];0.86[JPT][hapmap] |
| rs27524 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs27583 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs27689 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs28081 | 0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs30378 | 0.81[CHB][hapmap] |
| rs3822683 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57889668 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000249180 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| CAST | Distal transcriptional regulation |
| CAST | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014