SNP Report
Basic Infomation
| Name | rs3822683 dbSNP |
|---|---|
| Location | chr:5,96080883 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs26491 | 0.87[CEU][hapmap] |
| rs26492 | 0.93[CHD][hapmap] |
| rs26507 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs27037 | 0.91[CHD][hapmap] |
| rs27038 | 0.91[CHD][hapmap] |
| rs27524 | 0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.82[MKK][hapmap];0.89[ASN][1000 genomes] |
| rs28081 | 0.93[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs57889668 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000249180 | Proximal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| CAST | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014