SNP Report
Basic Infomation
| Name | rs27038 dbSNP |
|---|---|
| Location | chr:5,96112954 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs152468 | 0.91[TSI][hapmap] |
| rs26492 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs26493 | 0.91[TSI][hapmap] |
| rs26507 | 0.88[CHD][hapmap];0.86[JPT][hapmap] |
| rs27037 | 0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs27041 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs27043 | 0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs27433 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs27524 | 0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap] |
| rs27583 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs27689 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs28081 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3822683 | 0.91[CHD][hapmap] |
| rs39840 | 0.93[EUR][1000 genomes] |
| rs42398 | 0.84[CEU][hapmap];0.96[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ERAP1 | Distal transcriptional regulation |
| CAST | RNA binding protein mediated regulation |
| ERAP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
| eQTL related gene | Source |
|---|---|
| POLS | SCAN |
| ERAP2 | seeQTL |
| ERAP1 | Pritchard |
| ARTS-1 | Pritchard |
| LRAP | Pritchard |
| CAST | SCAN |
| ERAP2 | SCAN |
| FAM174A | SCAN |
| CHD1 | SCAN |
| EXOC3L | SCAN |
| CAST | SCAN |
| ERAP2 | SCAN |
| C5orf36 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014