SNP Report
Name | rs27433   dbSNP |
---|---|
Location | chr:5,96109935 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs152468 | 0.91[TSI][hapmap] |
rs26492 | 0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap] |
rs26493 | 0.91[TSI][hapmap] |
rs27037 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs27038 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs27041 | 0.84[CEU][hapmap];0.81[CHB][hapmap];0.96[EUR][1000 genomes] |
rs27043 | 0.81[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
rs27583 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs27689 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs28081 | 0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap] |
rs39840 | 0.93[EUR][1000 genomes] |
rs42398 | 0.81[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
CAST | Proximal transcriptional regulation |
ERAP1 | Distal transcriptional regulation |
RPRD2 | Distal transcriptional regulation |
CAST | RNA binding protein mediated regulation |
ERAP1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014