SNP Report
Basic Infomation
| Name | rs1854853 dbSNP |
|---|---|
| Location | chr:6,167533062 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946216 | 0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1331299 | 0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1556413 | 0.81[GIH][hapmap] |
| rs1571878 | 0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1855025 | 0.83[GIH][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3093017 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3093018 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3093019 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3093023 | 0.83[EUR][1000 genomes] |
| rs3093024 | 0.85[CEU][hapmap];0.84[MEX][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3093025 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3093026 | 0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6907666 | 0.82[CEU][hapmap];0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCR6 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014